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Intron Name: Anas_platyrhynchos_platyrhynchos_1_78828558_78830353_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78828558 - 78830353

Intron Length:

1796

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTGCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

TGGCACATAATA

Flanking Amino Acid:

GVPLPDTFSYGGHENFAKMI

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

75.2

40.6

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

84.8

0.78

0.9

80.5

Minor 5ss

36.8

-1.5

3.5

53.4

44.8

Minor BPS

48.5

-0.1

1.8

59.99

39.4

Associated Gene:

Gene:

RIMKLB

Ensembl Gene ID:

ENSAPLG00000014066

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014653

78822188 - 78868404

46217

ENSAPLT00000025909

78809659 - 78868036

58378