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Intron Name: Anas_platyrhynchos_platyrhynchos_1_7883716_7888568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7883716 - 7888568

Intron Length:

4853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCACAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TTTCCTTTCACA

Flanking Amino Acid:

LCKLAGKDAHTECANFIRVL

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.2

87.1

Major BPS

0.52

1.1

77.7

35.3

Major PPT

71.7

0.49

0.9

66.7

32.8

Minor 5ss

40.7

-1

2.8

50.6

39.2

Minor BPS

68.2

0.57

1.7

80.59

35.2

Associated Gene:

Gene:

SEMA3D

Ensembl Gene ID:

ENSAPLG00000010446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026447

7851439 - 7952258

100820

ENSAPLT00000010992

7837968 - 7952258

114291