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Intron Name: Anas_platyrhynchos_platyrhynchos_1_7888689_7892859_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7888689 - 7892859

Intron Length:

4171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

ATGTGTTTATTC

Flanking Amino Acid:

GYIELGTHKEETTFRLDTQN

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.1

25.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

83.3

0.75

0.8

81.4

35.2

Minor 5ss

39.6

-1.2

2.8

49.5

46.6

Minor BPS

48.3

-0.1

59.78

40.5

Associated Gene:

Gene:

SEMA3D

Ensembl Gene ID:

ENSAPLG00000010446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026447

7851439 - 7952258

100820

ENSAPLT00000010992

7837968 - 7952258

114291