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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78888793_78891382_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78888793 - 78891382
Intron Length:
2590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTCCTCACTC
Flanking Amino Acid:
CLLAFFLSPADWFPRAVNGQ
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68
38.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
29.5
-2.3
2.7
34.5
41
Minor BPS
57.6
0.22
1.9
70.19
41.8

Associated Gene:

Gene:
MFAP5
Ensembl Gene ID:
ENSAPLG00000014005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014580
78888730 - 78907283
18554