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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78891431_78892564_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78891431 - 78892564
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
TCTCTCAGGACA
Flanking Amino Acid:
VNGQEPDSVTGEVQTDSFIS
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
47.3
-0.2
1.8
61.31
38.3

Associated Gene:

Gene:
MFAP5
Ensembl Gene ID:
ENSAPLG00000014005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014580
78888730 - 78907283
18554