About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78892601_78893620_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78892601 - 78893620
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TCTCTCAGAACA
Flanking Amino Acid:
VQTDSFISTPAAAVTPPVLL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
90.8
0.92
0.6
83.9
31.1
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
51.2
0.03
1.7
66.54
39.4

Associated Gene:

Gene:
MFAP5
Ensembl Gene ID:
ENSAPLG00000014005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014580
78888730 - 78907283
18554