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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78893657_78894375_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78893657 - 78894375
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
ACCACACTAACT
Flanking Amino Acid:
AVTPPVLLSPVQSDSETTTA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
47.8
-0
2
65.24
44.6

Associated Gene:

Gene:
MFAP5
Ensembl Gene ID:
ENSAPLG00000014005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014580
78888730 - 78907283
18554