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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78895195_78895637_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78895195 - 78895637
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTGATCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TCCTGGTGATCC
Flanking Amino Acid:
KQCISYLCVTSVRRMYIINK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
64.1
0.32
1
58.8
42.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
38.6
-0.8
2.5
50.27
46.5

Associated Gene:

Gene:
MFAP5
Ensembl Gene ID:
ENSAPLG00000014005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014580
78888730 - 78907283
18554