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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78913473_78913958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78913473 - 78913958
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGGA
5'SS Class:
major
3'SS Sequence:
CTCTTTCCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
CCTGCCTCACAC
Flanking Amino Acid:
SLDFGYLRNKMGCHVEVLFL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.5
41.7
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
70.5
0.46
1
75.2
27.4
Minor 5ss
26.9
-2.7
3.7
38.1
46.8
Minor BPS
44
-0.4
2
51.17
45.8

Associated Gene:

Gene:
AICDA
Ensembl Gene ID:
ENSAPLG00000013954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014537
78913302 - 78915620
2319