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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78914230_78914378_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78914230 - 78914378
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
CACTCATAAACT
Flanking Amino Acid:
GAQIAIMTFKDYFYCWNTFV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
70.6
0.46
1
65
41.2
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
52.5
0.16
2
70.02
46.5

Associated Gene:

Gene:
AICDA
Ensembl Gene ID:
ENSAPLG00000013954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014537
78913302 - 78915620
2319