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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78914495_78914795_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78914495 - 78914795
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGACC
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CACTTGATAACT
Flanking Amino Acid:
LSRKLRRILLPLYEVDDLRD
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
0.9
68.3
36.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.5
0.89
0.7
84.3
30.8
Minor 5ss
28.2
-2.5
3
32.3
35.9
Minor BPS
46.4
-0.1
2.3
65.12
45.4

Associated Gene:

Gene:
AICDA
Ensembl Gene ID:
ENSAPLG00000013954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014537
78913302 - 78915620
2319