Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78924487_78926938_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78924487 - 78926938

Intron Length:

2452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTAGTAGC

5'SS Class:

major

3'SS Sequence:

TGTCCTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TAGCTGTTAATA

Flanking Amino Acid:

NCIELHRIILGLPPVLNLEY

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.2

40.4

Major BPS

84.4

0.85

34.5

Major PPT

79.8

0.67

0.8

77.6

31.1

Minor 5ss

32.6

-2

2.5

35.7

34.2

Minor BPS

49.5

-0

61.24

39.3

Associated Gene:

Gene:

APOBEC1

Ensembl Gene ID:

ENSAPLG00000028436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026990

78923807 - 78931171

7365