About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78927058_78928900_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78927058 - 78928900
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATATTTATTT
Flanking Amino Acid:
GVIIRIMSPADYSSSWKRFV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
65
42.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
42.7
-0.8
3
56.1
48
Minor BPS
52.7
0.16
1.7
70.48
40.6

Associated Gene:

Gene:
APOBEC1
Ensembl Gene ID:
ENSAPLG00000028436
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026990
78923807 - 78931171
7365