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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78929290_78929746_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78929290 - 78929746
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GATACTTTATTT
Flanking Amino Acid:
RGRAPRQNNQRWKMQPDDFK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
83.8
0.76
0.8
81.6
34.3
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
56.6
0.28
1.6
70.63
40.5

Associated Gene:

Gene:
APOBEC1
Ensembl Gene ID:
ENSAPLG00000028436
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026990
78923807 - 78931171
7365