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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78963036_78963773_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78963036 - 78963773
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACGTC
5'SS Class:
major
3'SS Sequence:
TCTTCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCTCTTCACTT
Flanking Amino Acid:
AASLGLTYKQVKTWFQNQRM
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69
36.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.9
0.74
0.8
74
35.7
Minor 5ss
34.8
-1.7
3.5
49.2
47.3
Minor BPS
49.7
0.06
1.8
67.06
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019724
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017209
78961440 - 78966056
4617