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Intron Name: Anas_platyrhynchos_platyrhynchos_1_7896320_7902600_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7896320 - 7902600

Intron Length:

6281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATCC

5'SS Class:

strong_major

3'SS Sequence:

GGGGAACTTCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

ATATTTATAACA

Flanking Amino Acid:

TDISEHYWLTGAKFIGTFPI

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

71.3

33.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

0.07

40.5

43.9

Minor 5ss

39.3

-1.2

49.1

41.1

Minor BPS

61.2

0.35

1.5

71.2

34.3

Associated Gene:

Gene:

SEMA3D

Ensembl Gene ID:

ENSAPLG00000010446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026447

7851439 - 7952258

100820

ENSAPLT00000010992

7837968 - 7952258

114291