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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78963864_78964297_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78963864 - 78964297
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTGCTCTTAATT
Flanking Amino Acid:
WVEKGMYLSQNGFHQASYLD
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
70
0.45
0.8
62.4
34.7
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
68.9
0.67
1.3
76.51
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019724
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017209
78961440 - 78966056
4617