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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_78971235_78971692_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78971235 - 78971692
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTCACT
Flanking Amino Acid:
WTARAQCLTQNSFQPSTYLD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
54.1
0.21
2.4
84.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014451
78970872 - 78975763
4892