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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79001141_79023417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79001141 - 79023417
Intron Length:
22277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AACAAATTAACC
Flanking Amino Acid:
MDLCCPGLAKKITAPLIYAV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
48.5
-0.1
1.8
57.54
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027151
78995058 - 79023497
28440