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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7902744_7917204_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7902744 - 7917204
Intron Length:
14461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTAGTAATT
Flanking Amino Acid:
ILSRVGRVCKNDMGGQRSLI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
74.6
40
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
57.1
0.3
2.2
84.39
36.6

Associated Gene:

Gene:
SEMA3D
Ensembl Gene ID:
ENSAPLG00000010446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026447
7851439 - 7952258
100820
ENSAPLT00000010992
7837968 - 7952258
114291