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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79086554_79089040_R

Intron Information:

Intron Rank:
153005
Intron Class:
major
Intron Phase:
Intron Coordinates:
79086554 - 79089040
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CACCCCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.9
0.52
0.8
66.7
28.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
54.6
0.13
1.8
60.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029903
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029998
79085579 - 79089680
4102