About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79104929_79105286_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79104929 - 79105286
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTGTGTTTACCT
Flanking Amino Acid:
DFNVSLQDHFKWVKQETEIS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
85.3
0.79
0.6
84.4
23.6
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
57.3
0.31
2.1
79.01
43.8

Associated Gene:

Gene:
NECAP1
Ensembl Gene ID:
ENSAPLG00000013392
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013959
79102244 - 79107044
4801