Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79125600_79126085_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79125600 - 79126085

Intron Length:

486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTACTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

CTGTCTTTGATG

Flanking Amino Acid:

WSSIEHSQFSELMESLRQAE

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

1.2

85.2

32.2

Major BPS

0.85

0.9

39.9

Major PPT

80.1

0.68

0.9

36.3

Minor 5ss

-1.8

3.3

49.7

46.6

Minor BPS

62.7

0.26

1.4

61.34

41.8

Associated Gene:

Gene:

FOXJ2

Ensembl Gene ID:

ENSAPLG00000013506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031693

79118513 - 79132806

14294

ENSAPLT00000014089

79119948 - 79150498

30551