Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79126911_79128801_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79126911 - 79128801

Intron Length:

1891

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCACCGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TCCTCTTTCACC

Flanking Amino Acid:

MLEKSSSSQHGFSSLLGDMQ

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

77.8

Major BPS

77.8

0.69

78.2

31.8

Major PPT

71.1

0.47

0.9

65.1

Minor 5ss

31.1

-2.2

2.7

37.5

40.1

Minor BPS

62.4

0.37

1.8

69.26

Associated Gene:

Gene:

FOXJ2

Ensembl Gene ID:

ENSAPLG00000013506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031693

79118513 - 79132806

14294

ENSAPLT00000014089

79119948 - 79150498

30551