Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79129472_79129832_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79129472 - 79129832

Intron Length:

361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGTGTT

5'SS Class:

major

3'SS Sequence:

TCCCCCTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TCCCCCTCCACA

Flanking Amino Acid:

RKRRHPPDDDIPQDSPEQEA

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.2

81.3

32.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.54

0.7

67.7

25.8

Minor 5ss

34.6

-1.8

3.4

48.3

41.3

Minor BPS

48.7

-0.1

60.78

45.1

Associated Gene:

Gene:

FOXJ2

Ensembl Gene ID:

ENSAPLG00000013506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031693

79118513 - 79132806

14294

ENSAPLT00000014089

79119948 - 79150498

30551