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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79132807_79150378_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
79132807 - 79150378
Intron Length:
17572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
GTTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
65.6
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.7
0.71
0.8
76.1
32.6
Minor 5ss
28.8
-2.4
3.1
30.9
36.7
Minor BPS
47
-0.3
2
56.14
45.3

Associated Gene:

Gene:
FOXJ2
Ensembl Gene ID:
ENSAPLG00000013506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014089
79119948 - 79150498
30551