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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79151816_79154693_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79151816 - 79154693
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAGT
5'SS Class:
major
3'SS Sequence:
TTTGCTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ACTTACTCACTT
Flanking Amino Acid:
EEVVNDRSWKVFNERCRIHY
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.7
45.6
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.9
0.65
0.9
76.7
37.4
Minor 5ss
40.1
-1.1
3.1
58.5
45.6
Minor BPS
47.9
-0
2
67.43
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037029
79151765 - 79157207
5443