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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79162427_79165468_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79162427 - 79165468
Intron Length:
3042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTATTTCTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
KKPEDIPETVSIEAIRAAQT
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
66.9
40.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
62.3
0.28
1.7
74.2
40.8
Minor 5ss
35.5
-1.6
3.2
45.6
36.6
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
FAM162A
Ensembl Gene ID:
ENSAPLG00000004872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005017
79162230 - 79168715
6486