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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79165578_79167269_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79165578 - 79167269
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCATATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATATGT
Flanking Amino Acid:
CIAMVIRGKQAIKRHESLTS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.2
0.48
1
65.6
40.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
46.3
-0.2
2.2
71.92
45.2

Associated Gene:

Gene:
FAM162A
Ensembl Gene ID:
ENSAPLG00000004872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005017
79162230 - 79168715
6486