About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79175366_79179041_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79175366 - 79179041
Intron Length:
3676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAGCA
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CGAGCTGTAACT
Flanking Amino Acid:
PYCALIEEAYGLDKIEFLQS
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
63.2
35
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
36.9
-1.5
3.3
44.8
45.1
Minor BPS
48.2
-0
2.1
64.81
45.8

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564