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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7917772_7918666_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7917772 - 7918666
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATGTGCTTATCA
Flanking Amino Acid:
PLVYGVFTTTSSVFKGSAVC
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
91.7
0.94
0.6
87.6
22.6
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
55.9
0.18
2
69.47
43

Associated Gene:

Gene:
SEMA3D
Ensembl Gene ID:
ENSAPLG00000010446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026447
7851439 - 7952258
100820
ENSAPLT00000010992
7837968 - 7952258
114291