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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79179221_79180026_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79179221 - 79180026
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
TGGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AAACAATTAACT
Flanking Amino Acid:
ATSGGSAEQIKYLVELGCIK
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
76.2
32.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
80
0.68
0.9
76.9
42.1
Minor 5ss
42.9
-0.8
2.9
57.9
40.8
Minor BPS
51.9
0.14
1.8
69.29
40.1

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564