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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79180155_79191383_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79180155 - 79191383
Intron Length:
11229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTATAACC
Flanking Amino Acid:
ITAGNRAQIQTVIDAHIFPA
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
62.3
0.36
1.6
75.58
34.4

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564