Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7918812_7930587_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7918812 - 7930587

Intron Length:

11776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

CTTTTTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTCATCGCAACT

Flanking Amino Acid:

GRIPYPRPGTCPSKTYDPLI

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

73.7

35.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

93.6

0.98

0.6

92.3

Minor 5ss

39.4

-1.2

3.3

58.2

40.5

Minor BPS

48.1

-0

2.2

72.3

44.6

Associated Gene:

Gene:

SEMA3D

Ensembl Gene ID:

ENSAPLG00000010446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026447

7851439 - 7952258

100820

ENSAPLT00000010992

7837968 - 7952258

114291