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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79193548_79194379_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79193548 - 79194379
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TCTTTGGTAATT
Flanking Amino Acid:
GVCRRLVELLMHNDYKVVSP
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
82.8
29.1
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
69.2
0.43
1
60.2
45
Minor 5ss
37.6
-1.4
3.1
54.1
43
Minor BPS
47.9
-0
2.6
74.4
43.5

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564