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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79195755_79197845_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79195755 - 79197845
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTGCTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAAAAAGT
Flanking Amino Acid:
LDCNILPPLLQLLSKQNRLT
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.4
0.64
0.9
77.1
37.1
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
40.7
-0.6
2.6
69.76
46.7

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564