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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79197935_79206424_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79197935 - 79206424
Intron Length:
8490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATT
5'SS Class:
major
3'SS Sequence:
TTCTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTGTTCTTCATT
Flanking Amino Acid:
SSEFEDVQEQAVWALGNIAG
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
75.8
39.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
36.2
-1.6
3.7
56.4
48
Minor BPS
59.6
0.38
1.8
74.52
43.3

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564