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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79207785_79208369_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79207785 - 79208369
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
TQKFRKLLSKEPNPPIDEVI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.5
0.51
1
70.9
38.7
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
KPNA1
Ensembl Gene ID:
ENSAPLG00000004886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005078
79173999 - 79212562
38564