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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79232101_79238470_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79232101 - 79238470
Intron Length:
6370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTTTTCTACGT
Flanking Amino Acid:
MIKHRAQKTPPGQ
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
78.2
0.63
0.9
70.3
40.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
45.4
-0.2
2.1
67.08
44.4

Associated Gene:

Gene:
FBXO40
Ensembl Gene ID:
ENSAPLG00000005334
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005501
79231356 - 79243056
11701