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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79249708_79249823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79249708 - 79249823
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
CATGCATTAAAC
Flanking Amino Acid:
LCCCVLALHAGPLEDPTAVP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
51.6
0.03
1.8
62.11
42.7

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012874
79249659 - 79319774
70116