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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79250067_79250807_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79250067 - 79250807
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTAAAT
U12 Branch Point Sequence:
TCTCTCCTCACA
Flanking Amino Acid:
STPPVIFEASAQSVSIPHAE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
52
0.05
1.3
61.2
42
Major PPT
81.6
0.71
0.7
75.9
26.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.3
-0.1
2.1
64.87
41.6

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012874
79249659 - 79319774
70116