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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79251090_79251696_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79251090 - 79251696
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCAGG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
AACTCCCCACTT
Flanking Amino Acid:
VSKEGTLLTTVEFQSSSSNT
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
59.7
46.7
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
84.1
0.77
0.8
77.1
37.1
Minor 5ss
38.9
-1.3
2.8
48.8
47
Minor BPS
44.1
-0.3
2
60.55
43.1

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012874
79249659 - 79319774
70116