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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79252039_79252219_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79252039 - 79252219
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
AGTAAGTCAAAT
Flanking Amino Acid:
AQHNIQLLVAEPPRVRVLPS
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
67.4
39.2
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
26.3
-2.7
2.9
27.4
37.8
Minor BPS
40.5
-0.6
2.3
59.21
42.9

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012874
79249659 - 79319774
70116