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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79253194_79319704_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79253194 - 79319704
Intron Length:
66511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGGAG
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CATACAGGAACA
Flanking Amino Acid:
GRRLSTEPLAWYDNEYGYSN
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
58.4
40.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
34.8
-1.7
3.5
42.2
46.3
Minor BPS
42.4
-0.5
2.3
55.7
42.6

Associated Gene:

Gene:
TAPBPL
Ensembl Gene ID:
ENSAPLG00000013511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012874
79249659 - 79319774
70116