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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79265387_79265808_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79265387 - 79265808
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
CAGCCCTAAACC
Flanking Amino Acid:
AVTLCTLNPYRYSAIRKKLD
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
68.2
0.41
0.9
63.3
31.6
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
55.1
0.14
1.8
60.84
44.2

Associated Gene:

Gene:
SCNN1A
Ensembl Gene ID:
ENSAPLG00000012377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012940
79264767 - 79271529
6763