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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79267969_79268578_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79267969 - 79268578
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
GACATGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TGTTCTTTGACA
Flanking Amino Acid:
WTSSLPGINNGLSLVVRTEQ
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
62.8
0.29
1
57.8
42.8
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
79.8
0.93
1
83.15
30.6

Associated Gene:

Gene:
SCNN1A
Ensembl Gene ID:
ENSAPLG00000012377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012940
79264767 - 79271529
6763