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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79268743_79269079_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79268743 - 79269079
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTTTTGTGAAAT
Flanking Amino Acid:
GIETSISMRKEMTVRLGGSY
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.5
0.55
1
66.1
45
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
49.1
0.01
2.2
74.71
41.6

Associated Gene:

Gene:
SCNN1A
Ensembl Gene ID:
ENSAPLG00000012377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012940
79264767 - 79271529
6763