Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79269467_79269759_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79269467 - 79269759

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCTGCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

CTTACCTGGATT

Flanking Amino Acid:

YCDYTKHVAWGYCYYKLLAE

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

84.4

33.5

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

70.4

0.46

0.9

68.3

37.4

Minor 5ss

37.9

-1.4

2.7

44.7

42.7

Minor BPS

60.8

0.42

1.6

76.57

40.3

Associated Gene:

Gene:

SCNN1A

Ensembl Gene ID:

ENSAPLG00000012377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012940

79264767 - 79271529

6763