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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79269839_79270153_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79269839 - 79270153
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTTGTTTTACA
Flanking Amino Acid:
GCFHKCRKPCKMTEYQLSAG
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
55
0.15
2.1
70.62
41.9

Associated Gene:

Gene:
SCNN1A
Ensembl Gene ID:
ENSAPLG00000012377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012940
79264767 - 79271529
6763