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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79270212_79270338_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79270212 - 79270338
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATAACACAATT
Flanking Amino Acid:
YSRWPSAVSEDWVFYMLSQQ
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.6
0.71
0.8
78.4
34.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
46.7
-0.1
2
68.95
41.2

Associated Gene:

Gene:
SCNN1A
Ensembl Gene ID:
ENSAPLG00000012377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012940
79264767 - 79271529
6763